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base: Commit

This repository is a base of Eos.


Commit MetaInfo

Revisión25962f0a06262c1cce667427126126da431340a6 (tree)
Tiempo2021-10-26 22:17:44
AutorTakuo Yasunaga <yasunaga@bio....>
CommiterTakuo Yasunaga

Log Message

Please enter the commit message for your changes. Lines starting
with '#' will be ignored, and an empty message aborts the commit.
On branch master
Your branch is up to date with 'origin/master'.
Changes to be committed:

modified: .DS_Store
modified: bin/wish/Display2/tclIndex
modified: src/.DS_Store
modified: src/Tools/.DS_Store
modified: src/Tools/.Source
modified: src/Tools/Config/Define.inc
modified: src/Tools/filter/tiff2mrc/src/tiff2mrc.c

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Diferencia incremental

Binary files a/.DS_Store and b/.DS_Store differ
--- a/bin/wish/Display2/tclIndex
+++ b/bin/wish/Display2/tclIndex
@@ -6,17 +6,43 @@
66 # element name is the name of a command and the value is
77 # a script that loads the command.
88
9-set auto_index(display2BindingSet) [list source [file join $dir Display2Binding.wish]]
10-set auto_index(colormapChange) [list source [file join $dir Display2Colormap.wish]]
11-set auto_index(display2DesktopSet) [list source [file join $dir Display2Desktop.wish]]
12-set auto_index(display2ETCSet) [list source [file join $dir Display2ETCSet.wish]]
13-set auto_index(fileOpenWinCreate) [list source [file join $dir Display2File.wish]]
14-set auto_index(fileNewWinCreate) [list source [file join $dir Display2File.wish]]
15-set auto_index(seqFileOpenWinCreate) [list source [file join $dir Display2File.wish]]
16-set auto_index(seqFileNewWinCreate) [list source [file join $dir Display2File.wish]]
9+set auto_index(roiAreaSelectStart) [list source [file join $dir RoiAreaSelect.wish]]
10+set auto_index(roiAreaSelectMotion) [list source [file join $dir RoiAreaSelect.wish]]
11+set auto_index(roiAreaSelectEnd) [list source [file join $dir RoiAreaSelect.wish]]
12+set auto_index(roiAreaSelectOK) [list source [file join $dir RoiAreaSelect.wish]]
13+set auto_index(projectionRecreate) [list source [file join $dir ProjectionUtil.wish]]
14+set auto_index(projectionCreate) [list source [file join $dir ProjectionUtil.wish]]
15+set auto_index(projectionClear) [list source [file join $dir ProjectionUtil.wish]]
16+set auto_index(projectionChange) [list source [file join $dir ProjectionUtil.wish]]
1717 set auto_index(fileOpen) [list source [file join $dir Display2Image.wish]]
1818 set auto_index(mainImagePut) [list source [file join $dir Display2Image.wish]]
1919 set auto_index(overviewImagePut) [list source [file join $dir Display2Image.wish]]
20+set auto_index(roiAreaFFT) [list source [file join $dir RoiAreaUtil.wish]]
21+set auto_index(splineNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
22+set auto_index(rectangleNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
23+set auto_index(lineNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
24+set auto_index(pointDistance) [list source [file join $dir RoiAreaUtil.wish]]
25+set auto_index(pointDistance2) [list source [file join $dir RoiAreaUtil.wish]]
26+set auto_index(vectorAngle) [list source [file join $dir RoiAreaUtil.wish]]
27+set auto_index(coordGetInMainImageToReal) [list source [file join $dir RoiAreaUtil.wish]]
28+set auto_index(coordGetInMainImageToCanvas) [list source [file join $dir RoiAreaUtil.wish]]
29+set auto_index(dataGetInMainImageToReal) [list source [file join $dir RoiAreaUtil.wish]]
30+set auto_index(dataGetInMainImageToCanvas) [list source [file join $dir RoiAreaUtil.wish]]
31+set auto_index(pointSet) [list source [file join $dir RoiAreaUtil.wish]]
32+set auto_index(roiAreaZoomIn) [list source [file join $dir RoiAreaZoom.wish]]
33+set auto_index(roiAreaZoomOut) [list source [file join $dir RoiAreaZoom.wish]]
34+set auto_index(roiAreaZoom) [list source [file join $dir RoiAreaZoom.wish]]
35+set auto_index(colormapChange) [list source [file join $dir Display2Colormap.wish]]
36+set auto_index(display2SetVar) [list source [file join $dir Display2Init.wish]]
37+set auto_index(display2InitVar) [list source [file join $dir Display2Init.wish]]
38+set auto_index(display2InitVarSet) [list source [file join $dir Display2Init.wish]]
39+set auto_index(diplay2CanvasInit) [list source [file join $dir Display2Init.wish]]
40+set auto_index(display2Init) [list source [file join $dir Display2Init.wish]]
41+set auto_index(roiInformationWinCreate) [list source [file join $dir Display2InfoROI.wish]]
42+set auto_index(roiLineInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
43+set auto_index(roiSplineInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
44+set auto_index(roiRectangleInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
45+set auto_index(roiAnalysisFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
2046 set auto_index(histgramGraphCreate) [list source [file join $dir Display2Info.wish]]
2147 set auto_index(display2InformationWinCreate) [list source [file join $dir Display2Info.wish]]
2248 set auto_index(fileReopen) [list source [file join $dir Display2Info.wish]]
@@ -28,40 +54,7 @@ set auto_index(sectionInformationWinCreate) [list source [file join $dir Display
2854 set auto_index(ctfInformationWinCreate) [list source [file join $dir Display2Info.wish]]
2955 set auto_index(unitCellInformationWinCreate) [list source [file join $dir Display2Info.wish]]
3056 set auto_index(scaleInfoWinCreate) [list source [file join $dir Display2Info.wish]]
31-set auto_index(roiInformationWinCreate) [list source [file join $dir Display2InfoROI.wish]]
32-set auto_index(roiLineInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
33-set auto_index(roiSplineInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
34-set auto_index(roiRectangleInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
35-set auto_index(roiAnalysisFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
36-set auto_index(display2SetVar) [list source [file join $dir Display2Init.wish]]
37-set auto_index(display2InitVar) [list source [file join $dir Display2Init.wish]]
38-set auto_index(display2InitVarSet) [list source [file join $dir Display2Init.wish]]
39-set auto_index(diplay2CanvasInit) [list source [file join $dir Display2Init.wish]]
40-set auto_index(display2Init) [list source [file join $dir Display2Init.wish]]
41-set auto_index(display2MenuSet) [list source [file join $dir Display2Menu.wish]]
42-set auto_index(menuFileCreate) [list source [file join $dir Display2Menu.wish]]
43-set auto_index(menuSeqFileCreate) [list source [file join $dir Display2Menu.wish]]
44-set auto_index(menuWindowCreate) [list source [file join $dir Display2Menu.wish]]
45-set auto_index(menuInfoCreate) [list source [file join $dir Display2Menu.wish]]
46-set auto_index(menuHelpCreate) [list source [file join $dir Display2Menu.wish]]
47-set auto_index(menuExitCreate) [list source [file join $dir Display2Menu.wish]]
48-set auto_index(display2MenuSet2) [list source [file join $dir Display2Menu2.wish]]
49-set auto_index(roiRelatedObjectRecreate) [list source [file join $dir Display2MenuROI.wish]]
50-set auto_index(menuRoiCreate) [list source [file join $dir Display2MenuROI.wish]]
51-set auto_index(menuRoiCancelCommand) [list source [file join $dir Display2MenuROI.wish]]
52-set auto_index(menuRoiSingleMultiTransform) [list source [file join $dir Display2MenuROI.wish]]
53-set auto_index(menuMultiRoiOKCommand) [list source [file join $dir Display2MenuROI.wish]]
54-set auto_index(menuMultiRoiAllDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
55-set auto_index(menuMultiRoiDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
56-set auto_index(menuEditCreate) [list source [file join $dir Display2MenuROI.wish]]
57-set auto_index(layerLineRecreate) [list source [file join $dir LayerLineUtil.wish]]
58-set auto_index(layerLineCreate) [list source [file join $dir LayerLineUtil.wish]]
59-set auto_index(layerLineClear) [list source [file join $dir LayerLineUtil.wish]]
60-set auto_index(layerLineChange) [list source [file join $dir LayerLineUtil.wish]]
61-set auto_index(projectionRecreate) [list source [file join $dir ProjectionUtil.wish]]
62-set auto_index(projectionCreate) [list source [file join $dir ProjectionUtil.wish]]
63-set auto_index(projectionClear) [list source [file join $dir ProjectionUtil.wish]]
64-set auto_index(projectionChange) [list source [file join $dir ProjectionUtil.wish]]
57+set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
6558 set auto_index(roiAreaCreateStart) [list source [file join $dir RoiAreaCreate.wish]]
6659 set auto_index(roiAreaCreateMotion) [list source [file join $dir RoiAreaCreate.wish]]
6760 set auto_index(roiAreaCreateEnd) [list source [file join $dir RoiAreaCreate.wish]]
@@ -79,15 +72,22 @@ set auto_index(roiSplineEnd) [list source [file join $dir RoiAreaCreate.wish]]
7972 set auto_index(splineCreate) [list source [file join $dir RoiAreaCreate.wish]]
8073 set auto_index(knobShow) [list source [file join $dir RoiAreaCreate.wish]]
8174 set auto_index(knobHide) [list source [file join $dir RoiAreaCreate.wish]]
82-set auto_index(roiMultiAreaInfoSave) [list source [file join $dir RoiAreaFile.wish]]
83-set auto_index(roiMultiAreaInfoLoad) [list source [file join $dir RoiAreaFile.wish]]
84-set auto_index(roiAreaFileSave) [list source [file join $dir RoiAreaFile.wish]]
85-set auto_index(roiAreaMoveStart) [list source [file join $dir RoiAreaMove.wish]]
86-set auto_index(roiAreaMoveMotion) [list source [file join $dir RoiAreaMove.wish]]
87-set auto_index(roiAreaMoveEnd) [list source [file join $dir RoiAreaMove.wish]]
88-set auto_index(rectangleMove) [list source [file join $dir RoiAreaMove.wish]]
89-set auto_index(lineMove) [list source [file join $dir RoiAreaMove.wish]]
90-set auto_index(splineMove) [list source [file join $dir RoiAreaMove.wish]]
75+set auto_index(display2BindingSet) [list source [file join $dir Display2Binding.wish]]
76+set auto_index(display2MenuSet) [list source [file join $dir Display2Menu.wish]]
77+set auto_index(menuFileCreate) [list source [file join $dir Display2Menu.wish]]
78+set auto_index(menuSeqFileCreate) [list source [file join $dir Display2Menu.wish]]
79+set auto_index(menuWindowCreate) [list source [file join $dir Display2Menu.wish]]
80+set auto_index(menuInfoCreate) [list source [file join $dir Display2Menu.wish]]
81+set auto_index(menuHelpCreate) [list source [file join $dir Display2Menu.wish]]
82+set auto_index(menuExitCreate) [list source [file join $dir Display2Menu.wish]]
83+set auto_index(roiRelatedObjectRecreate) [list source [file join $dir Display2MenuROI.wish]]
84+set auto_index(menuRoiCreate) [list source [file join $dir Display2MenuROI.wish]]
85+set auto_index(menuRoiCancelCommand) [list source [file join $dir Display2MenuROI.wish]]
86+set auto_index(menuRoiSingleMultiTransform) [list source [file join $dir Display2MenuROI.wish]]
87+set auto_index(menuMultiRoiOKCommand) [list source [file join $dir Display2MenuROI.wish]]
88+set auto_index(menuMultiRoiAllDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
89+set auto_index(menuMultiRoiDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
90+set auto_index(menuEditCreate) [list source [file join $dir Display2MenuROI.wish]]
9191 set auto_index(roiAreaResizeStart) [list source [file join $dir RoiAreaResize.wish]]
9292 set auto_index(roiAreaResizeMotion) [list source [file join $dir RoiAreaResize.wish]]
9393 set auto_index(roiAreaResizeEnd) [list source [file join $dir RoiAreaResize.wish]]
@@ -104,29 +104,18 @@ set auto_index(lineRotate) [list source [file join $dir RoiAreaRotate.wish]]
104104 set auto_index(lineRotateCalc) [list source [file join $dir RoiAreaRotate.wish]]
105105 set auto_index(splineRotate) [list source [file join $dir RoiAreaRotate.wish]]
106106 set auto_index(splineRotateCalc) [list source [file join $dir RoiAreaRotate.wish]]
107-set auto_index(roiAreaSelectStart) [list source [file join $dir RoiAreaSelect.wish]]
108-set auto_index(roiAreaSelectMotion) [list source [file join $dir RoiAreaSelect.wish]]
109-set auto_index(roiAreaSelectEnd) [list source [file join $dir RoiAreaSelect.wish]]
110-set auto_index(roiAreaSelectOK) [list source [file join $dir RoiAreaSelect.wish]]
111-set auto_index(roiAreaFFT) [list source [file join $dir RoiAreaUtil.wish]]
112-set auto_index(splineNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
113-set auto_index(rectangleNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
114-set auto_index(lineNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
115-set auto_index(pointDistance) [list source [file join $dir RoiAreaUtil.wish]]
116-set auto_index(pointDistance2) [list source [file join $dir RoiAreaUtil.wish]]
117-set auto_index(vectorAngle) [list source [file join $dir RoiAreaUtil.wish]]
118-set auto_index(coordGetInMainImageToReal) [list source [file join $dir RoiAreaUtil.wish]]
119-set auto_index(coordGetInMainImageToCanvas) [list source [file join $dir RoiAreaUtil.wish]]
120-set auto_index(dataGetInMainImageToReal) [list source [file join $dir RoiAreaUtil.wish]]
121-set auto_index(dataGetInMainImageToCanvas) [list source [file join $dir RoiAreaUtil.wish]]
122-set auto_index(pointSet) [list source [file join $dir RoiAreaUtil.wish]]
123-set auto_index(roiAreaZoomIn) [list source [file join $dir RoiAreaZoom.wish]]
124-set auto_index(roiAreaZoomOut) [list source [file join $dir RoiAreaZoom.wish]]
125-set auto_index(roiAreaZoom) [list source [file join $dir RoiAreaZoom.wish]]
126-set auto_index(ScaleRecreate) [list source [file join $dir ScaleUtil.wish]]
127-set auto_index(ScaleCreate) [list source [file join $dir ScaleUtil.wish]]
128-set auto_index(ScaleClear) [list source [file join $dir ScaleUtil.wish]]
129-set auto_index(ScaleChange) [list source [file join $dir ScaleUtil.wish]]
107+set auto_index(roiMultiAreaInfoSave) [list source [file join $dir RoiAreaFile.wish]]
108+set auto_index(roiMultiAreaInfoLoad) [list source [file join $dir RoiAreaFile.wish]]
109+set auto_index(roiAreaFileSave) [list source [file join $dir RoiAreaFile.wish]]
110+set auto_index(layerLineRecreate) [list source [file join $dir LayerLineUtil.wish]]
111+set auto_index(layerLineCreate) [list source [file join $dir LayerLineUtil.wish]]
112+set auto_index(layerLineClear) [list source [file join $dir LayerLineUtil.wish]]
113+set auto_index(layerLineChange) [list source [file join $dir LayerLineUtil.wish]]
114+set auto_index(fileOpenWinCreate) [list source [file join $dir Display2File.wish]]
115+set auto_index(fileNewWinCreate) [list source [file join $dir Display2File.wish]]
116+set auto_index(seqFileOpenWinCreate) [list source [file join $dir Display2File.wish]]
117+set auto_index(seqFileNewWinCreate) [list source [file join $dir Display2File.wish]]
118+set auto_index(display2DesktopSet) [list source [file join $dir Display2Desktop.wish]]
130119 set auto_index(sectionInit) [list source [file join $dir SectionUtil.wish]]
131120 set auto_index(sectionRecreateAll) [list source [file join $dir SectionUtil.wish]]
132121 set auto_index(sectionRecreate) [list source [file join $dir SectionUtil.wish]]
@@ -135,5 +124,16 @@ set auto_index(sectionCreate) [list source [file join $dir SectionUtil.wish]]
135124 set auto_index(sectionClearAll) [list source [file join $dir SectionUtil.wish]]
136125 set auto_index(sectionClear) [list source [file join $dir SectionUtil.wish]]
137126 set auto_index(sectionChange) [list source [file join $dir SectionUtil.wish]]
127+set auto_index(ScaleRecreate) [list source [file join $dir ScaleUtil.wish]]
128+set auto_index(ScaleCreate) [list source [file join $dir ScaleUtil.wish]]
129+set auto_index(ScaleClear) [list source [file join $dir ScaleUtil.wish]]
130+set auto_index(ScaleChange) [list source [file join $dir ScaleUtil.wish]]
138131 set auto_index(unitCellRecreate) [list source [file join $dir UnitCell.wish]]
139-set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
132+set auto_index(display2MenuSet2) [list source [file join $dir Display2Menu2.wish]]
133+set auto_index(roiAreaMoveStart) [list source [file join $dir RoiAreaMove.wish]]
134+set auto_index(roiAreaMoveMotion) [list source [file join $dir RoiAreaMove.wish]]
135+set auto_index(roiAreaMoveEnd) [list source [file join $dir RoiAreaMove.wish]]
136+set auto_index(rectangleMove) [list source [file join $dir RoiAreaMove.wish]]
137+set auto_index(lineMove) [list source [file join $dir RoiAreaMove.wish]]
138+set auto_index(splineMove) [list source [file join $dir RoiAreaMove.wish]]
139+set auto_index(display2ETCSet) [list source [file join $dir Display2ETCSet.wish]]
Binary files a/src/.DS_Store and b/src/.DS_Store differ
Binary files a/src/Tools/.DS_Store and b/src/Tools/.DS_Store differ
--- a/src/Tools/.Source
+++ b/src/Tools/.Source
@@ -26,6 +26,7 @@ psUtil \
2626 random \
2727 rec3d \
2828 simulation \
29+test \
2930 tiffFileUtil \
3031 timeSeries \
3132 transform \
--- a/src/Tools/Config/Define.inc
+++ b/src/Tools/Config/Define.inc
@@ -1,62 +1,5 @@
11 WORLDNAME=Tools
2-<<<<<<< HEAD
32 WORLDNAME=Tools
43 WORLDNAME=Tools
54 WORLDNAME=Tools
65 WORLDNAME=Tools
7-WORLDNAME=Tools
8-WORLDNAME=Tools
9-WORLDNAME=Tools
10-WORLDNAME=Tools
11-WORLDNAME=Tools
12-<<<<<<< HEAD
13-=======
14-WORLDNAME=Tools
15-WORLDNAME=Tools
16-WORLDNAME=Tools
17-WORLDNAME=Tools
18-WORLDNAME=Tools
19-WORLDNAME=Tools
20-WORLDNAME=Tools
21-WORLDNAME=Tools
22-WORLDNAME=Tools
23-WORLDNAME=Tools
24-WORLDNAME=Tools
25-WORLDNAME=Tools
26-WORLDNAME=Tools
27-WORLDNAME=Tools
28-WORLDNAME=Tools
29-WORLDNAME=Tools
30-WORLDNAME=Tools
31-WORLDNAME=Tools
32-WORLDNAME=Tools
33-WORLDNAME=Tools
34-WORLDNAME=Tools
35-WORLDNAME=Tools
36-WORLDNAME=Tools
37-WORLDNAME=Tools
38-WORLDNAME=Tools
39-WORLDNAME=Tools
40-WORLDNAME=Tools
41-WORLDNAME=Tools
42-WORLDNAME=Tools
43-WORLDNAME=Tools
44-WORLDNAME=Tools
45-WORLDNAME=Tools
46-WORLDNAME=Tools
47-WORLDNAME=Tools
48-WORLDNAME=Tools
49-WORLDNAME=Tools
50-WORLDNAME=Tools
51-WORLDNAME=Tools
52-WORLDNAME=Tools
53-WORLDNAME=Tools
54-WORLDNAME=Tools
55-WORLDNAME=Tools
56-WORLDNAME=Tools
57-WORLDNAME=Tools
58-WORLDNAME=Tools
59-WORLDNAME=Tools
60-=======
61->>>>>>> refs/remotes/origin/master
62->>>>>>> 095c177e7074abc54cbfef5b79eeef49f6aabf12
--- a/src/Tools/filter/tiff2mrc/src/tiff2mrc.c
+++ b/src/Tools/filter/tiff2mrc/src/tiff2mrc.c
@@ -682,8 +682,8 @@ ltiff2mrc(mrcImage* mrc, TIFF* tiff, ltiff2mrcInfo* linfo, long mode)
682682 mrcImage shrink;
683683 mrcImageParaTypeIntegerCoord S;
684684
685- S.x = S.y = linfo->Shrink;
686- S.z = 1;
685+ S.z = S.x = S.y = linfo->Shrink;
686+ //S.z = 1;
687687 lmrcImageShrink(&shrink, mrc, S, 0);
688688
689689 *mrc = shrink;
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