OSDN -- Desarrollar y descargar software de código abierto
Translation Status of Español translation status for es
  • R/O
  • HTTP
  • SSH
  • HTTPS
Fork

base: Commit

This repository is a base of Eos.


Commit MetaInfo

Revisión93336706519ea107284a1ebd53361d76d545d427 (tree)
Tiempo2016-02-28 08:30:05
AutorTakuo Yasunaga <yasunaga@bio....>
CommiterTakuo Yasunaga

Log Message

New Tool:
new file: bin/mrcImage2FFT
new file: include/lmrcImageToFFT.h
modified: src/Objects/DataManip/transform/src/.CHeader
new file: src/Objects/DataManip/transform/src/lmrcImageToFFT.c
new file: src/Objects/DataManip/transform/src/lmrcImageToFFT.h
modified: src/Tools/Config/Define.inc

typechange: src/Tools/Makefile
modified: src/Tools/filter/.Source
new file: src/Tools/filter/mrcImage2FFT/

Modified:
modified: env/Eos_env

Cambiar Resumen

Diferencia incremental

--- /dev/null
+++ b/bin/mrcImage2FFT
@@ -0,0 +1 @@
1+../sbin/MachineIndependent
\ No newline at end of file
--- a/env/Eos_env
+++ b/env/Eos_env
@@ -6,7 +6,7 @@ if [ -z "$EOS_HOME0" ] ; then
66 export EOS_HOME=$HOME/Eos
77 export EOS_MIRROR_SITE=$HOME/EosMirror
88 else
9- export EOS_HOME=$EOS_HOME
9+ export EOS_HOME=$EOS_HOME0
1010 export EOS_MIRROR_SITE=$EOS_MIRROR_SITE
1111 fi
1212
--- /dev/null
+++ b/include/lmrcImageToFFT.h
@@ -0,0 +1,42 @@
1+/*
2+# lmrcImageToFFT.h : $Revision$
3+# $Date$
4+# Created by $Author$
5+# Usage : lmrcImageToFFT.h
6+# Attention
7+# $Loccker$
8+# $State$
9+#
10+*/
11+/* $Log$ */
12+#ifndef LMRCIMAGETOFFT_H
13+#define LMRCIMAGETOFFT_H
14+
15+#include <stdio.h>
16+#include "mrcImage.h"
17+
18+/* constant begin */
19+
20+
21+/* constant end */
22+
23+/* struct begin */
24+
25+
26+/* struct end */
27+
28+#ifdef __cplusplus
29+extern "C" {
30+#endif
31+
32+/* prototype begin */
33+
34+extern void lmrcImageToFFT(mrcImage* out, mrcImage* in, mrcImageParaTypeRealCoord center, int mode);
35+
36+/* prototype end */
37+
38+#ifdef __cplusplus
39+};
40+#endif
41+
42+#endif /* LMRCIMAGETOFFT_H */
--- a/src/Objects/DataManip/transform/src/.CHeader
+++ b/src/Objects/DataManip/transform/src/.CHeader
@@ -13,4 +13,5 @@ lmrc2Dto3D.h \
1313 lmrc3Dto2D.h \
1414 lmrcImageFileListAndEulerAngleDataRead.h \
1515 lmrcImageOrientationSearchBySimultaneousMinimization.h \
16+lmrcImageToFFT.h \
1617
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/lmrcImageToFFT.c
@@ -0,0 +1,70 @@
1+/*
2+# %M% %Y% %I%
3+# The latest update : %G% at %U%
4+#
5+#%Z% lmrcImageToFFT ver %I%
6+#%Z% Created by
7+#%Z%
8+#%Z% Usage : lmrcImageToFFT
9+#%Z% Attention
10+#%Z%
11+*/
12+static char __sccs_id[] = "%Z%lmrcImageToFFT ver%I%; Date:%D% %Z%";
13+
14+#undef DEBUG
15+#include "genUtil.h"
16+
17+#include <stdlib.h>
18+#include "./lmrcImageToFFT.h"
19+
20+void
21+lmrcImageToFFT(mrcImage* out, mrcImage* in, mrcImageParaTypeRealCoord centre, int mode)
22+{
23+ mrcImageParaTypeReal X, Y, Z;
24+ mrcImageParaTypeReal srcX, srcY, srcZ;
25+ double data;
26+
27+ DEBUGPRINT("lmrcImageToFFT Start\n");
28+ out->Header = in->Header;
29+ out->HeaderMode = mrcComplexFloatFT;
30+ mrcInit(out, NULL);
31+
32+
33+ for(Z=-out->HeaderN.z/2; Z<MAX(1,out->HeaderN.z/2); Z++) {
34+ for(Y=-out->HeaderN.y/2; Y<MAX(1,out->HeaderN.y/2); Y++) {
35+ for(X=0; X<=out->HeaderN.x/2; X++) {
36+ srcX = X + centre.x;
37+ srcY = Y + centre.y;
38+ srcZ = Z + centre.z;
39+
40+ mrcPixelDataGet(in, srcX, srcY, srcZ, &data, mrcPixelRePart, mrcPixelHowNearest);
41+ DEBUGPRINT4("%f %f %f %f\n", srcX, srcY, srcZ, data);
42+ switch(mode) {
43+ case 0:
44+ mrcPixelDataSet(out, X, Y, Z, data, mrcPixelRePart);
45+ break;
46+ case 1:
47+ mrcPixelDataSet(out, X, Y, Z, pow(10,data), mrcPixelRePart);
48+ break;
49+ case 2:
50+ mrcPixelDataSet(out, X, Y, Z, sqrt(data), mrcPixelRePart);
51+ break;
52+ case 3:
53+ mrcPixelDataSet(out, X, Y, Z, pow(10,sqrt(data)), mrcPixelRePart);
54+ break;
55+ case 4:
56+ mrcPixelDataSet(out, X, Y, Z, cos(data), mrcPixelRePart);
57+ mrcPixelDataSet(out, X, Y, Z, sin(data), mrcPixelImPart);
58+ break;
59+ case 5:
60+ mrcPixelDataSet(out, X, Y, Z, data, mrcPixelRePart);
61+ break;
62+ default: {
63+ fprintf(stderr, "Not supported mode: %d\n", mode);
64+ exit(EXIT_FAILURE);
65+ }
66+ }
67+ }
68+ }
69+ }
70+}
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/lmrcImageToFFT.h
@@ -0,0 +1,42 @@
1+/*
2+# lmrcImageToFFT.h : $Revision$
3+# $Date$
4+# Created by $Author$
5+# Usage : lmrcImageToFFT.h
6+# Attention
7+# $Loccker$
8+# $State$
9+#
10+*/
11+/* $Log$ */
12+#ifndef LMRCIMAGETOFFT_H
13+#define LMRCIMAGETOFFT_H
14+
15+#include <stdio.h>
16+#include "mrcImage.h"
17+
18+/* constant begin */
19+
20+
21+/* constant end */
22+
23+/* struct begin */
24+
25+
26+/* struct end */
27+
28+#ifdef __cplusplus
29+extern "C" {
30+#endif
31+
32+/* prototype begin */
33+
34+extern void lmrcImageToFFT(mrcImage* out, mrcImage* in, mrcImageParaTypeRealCoord center, int mode);
35+
36+/* prototype end */
37+
38+#ifdef __cplusplus
39+};
40+#endif
41+
42+#endif /* LMRCIMAGETOFFT_H */
similarity index 100%
rename from src/Tools/mrcImage/mrcFFTCentralSectionCompare/src/test/Out2.txt
rename to src/Objects/DataManip/transform/src/lmrcImageToFFT.h.org
--- a/src/Tools/Config/Define.inc
+++ b/src/Tools/Config/Define.inc
@@ -1 +1,5 @@
11 WORLDNAME=Tools
2+WORLDNAME=Tools
3+WORLDNAME=Tools
4+WORLDNAME=Tools
5+WORLDNAME=Tools
--- a/src/Tools/Makefile
+++ /dev/null
@@ -1 +0,0 @@
1-/Users/nakanosaki/Eos/src/Config/Template/ToolsHomeTemplate.Dir/Makefile
\ No newline at end of file
--- /dev/null
+++ b/src/Tools/Makefile
@@ -0,0 +1,5 @@
1+include ../Config/Define.inc
2+include Config/Define.inc
3+include .Source
4+
5+include Config/Target.inc
--- a/src/Tools/filter/.Source
+++ b/src/Tools/filter/.Source
@@ -18,6 +18,7 @@ mrc2png \
1818 mrc2pov \
1919 mrc2tiff \
2020 mrc2viff \
21+mrcImage2FFT \
2122 pdb2ucd \
2223 test2 \
2324 tgaInfo \
--- a/src/Tools/filter/.Source.org
+++ b/src/Tools/filter/.Source.org
@@ -14,6 +14,7 @@ mrc2fld \
1414 mrc2gif \
1515 mrc2lattice \
1616 mrc2mrc \
17+mrc2png \
1718 mrc2pov \
1819 mrc2tiff \
1920 mrc2viff \
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/Config/Define.inc
@@ -0,0 +1,4 @@
1+OBJECTNAME = mrcImage2FFT
2+EXTRA_LIB =
3+EXTRA_CCOPTS =
4+EXTRA_INC =
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/Config/OptionControlFile
@@ -0,0 +1,7 @@
1+# OptionControlFile
2+# FileFormat
3+"-i","-i[nput]","Input:mrcImage(Image)","Essential","1","1","In","inFile::mrcImage","NULL"
4+"-o","-o[utput]","Output:mrcImage(FT)","Essential","1","1","Out","outFile::mrcImage","NULL"
5+"-C","-C[entre]","Centre","Optional","3","1","CentreX","Real","-1","2","CentreY","Real","-1","3","CentreZ","Real","-1"
6+"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
7+"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/Makefile
@@ -0,0 +1,115 @@
1+include ../../../Config/Define.inc
2+include ../../Config/Define.inc
3+include ../Config/Define.inc
4+include Config/Define.inc
5+
6+all:
7+ cd src; make all; cd ..
8+
9+install:
10+ cd src; make install; cd ..
11+
12+
13+putSF:
14+ if [ -f private ] ; \
15+ then \
16+ echo "$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME) is private"; \
17+ else \
18+ cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE commit || cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE import src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME); \
19+ fi
20+
21+put:
22+ cd src; make put; cd ..
23+
24+clean:
25+ cd src; make clean; cd ..
26+
27+depend:
28+ cd src; make depend; cd ..
29+
30+check:
31+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
32+ echo making directory; \
33+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
34+ fi
35+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
36+ @$(RM) src/Makefile
37+ @echo "New src/Makefile"
38+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
39+ @cd src; touch $(OSTYPE)/.Depend; make depend
40+
41+update:
42+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
43+ echo making directory; \
44+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
45+ fi
46+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
47+ @$(RM) src/Makefile
48+ @echo "New src/Makefile"
49+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
50+ @cd src; touch $(OSTYPE)/.Depend; echo "Y" | make update
51+
52+cvsupdate::
53+ cvs -d $(EOS_CVSROOT) update -d
54+
55+cvscommit::
56+ cvs -d $(EOS_CVSROOT) commit
57+
58+backup:
59+ @cd ../../../..; \
60+ echo $(OBJECTNAME) ; \
61+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
62+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
63+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
64+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
65+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
66+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
67+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
68+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
69+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
70+
71+backup-all:
72+ @cd ../../../..; \
73+ echo $(OBJECTNAME) ; \
74+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
75+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
76+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
77+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
78+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
79+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
80+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
81+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
82+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
83+
84+distribute:
85+ cd ../../../..; \
86+ echo $(OBJECTNAME) ; \
87+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
88+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
89+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
90+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
91+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
92+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
93+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
94+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
95+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
96+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
97+
98+distribute-all:
99+ @cd ../../../..; \
100+ echo $(OBJECTNAME) ; \
101+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
102+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
103+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
104+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
105+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
106+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
107+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
108+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
109+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
110+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
111+
112+eosintroduce:
113+ ${EOS_HOME}/sbin/eosintroduce ${WORLDNAME} ${CLASSNAME} ${OBJECTNAME} ./
114+
115+include Config/Target.inc
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/doc/Makefile
@@ -0,0 +1,2 @@
1+install:
2+ cd ../src; make install-doc; cd ../doc
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/inc/config.h
@@ -0,0 +1,6 @@
1+#ifndef CONFIG_H
2+#define CONFIG_H
3+
4+#include "../inc/mrcImage2FFT.h"
5+
6+#endif /* CONFIG_H */
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/inc/mrcImage2FFT.h
@@ -0,0 +1,55 @@
1+#ifndef MRCIMAGE2FFT_H
2+#define MRCIMAGE2FFT_H
3+#include <stdio.h>
4+#include <stdlib.h>
5+
6+#define OPTION_FLAG '-'
7+#define OPTION_FLAG_POS (0)
8+#define OPTION_POS (1)
9+
10+
11+
12+
13+typedef struct mrcImage2FFTInfo {
14+ long flagRedirect;
15+
16+ long flagIn;
17+ char* In;
18+ FILE* fptIn;
19+
20+ long flagOut;
21+ char* Out;
22+ FILE* fptOut;
23+
24+ long flagCentreX;
25+ float CentreX;
26+
27+ long flagCentreY;
28+ float CentreY;
29+
30+ long flagCentreZ;
31+ float CentreZ;
32+
33+ long flagconfigFile;
34+ char* configFile;
35+ FILE* fptconfigFile;
36+
37+ long flagmode;
38+ long mode;
39+
40+} mrcImage2FFTInfo;
41+#ifdef __cplusplus
42+extern "C" {
43+#endif
44+extern void argCheck(mrcImage2FFTInfo* info, int argc, char* avgv[]);
45+extern void khorosInit(int argc, char* avgv[]);
46+extern void init0(mrcImage2FFTInfo* info);
47+extern void init1(mrcImage2FFTInfo* info);
48+extern void usage(char* usage);
49+extern void additionalUsage(void);
50+extern void htmlBeforeUsage(char* usage);
51+extern void htmlAfterUsage(char* usage);
52+#ifdef __cplusplus
53+};
54+#endif
55+#endif /* MRCIMAGE2FFT_H */
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/src/Makefile
@@ -0,0 +1,427 @@
1+include ../Config/Define.inc
2+include ../../Config/Define.inc
3+include ../../../Config/Define.inc
4+include ../../../../Config/Define.inc
5+
6+EOSHOME=../../../../../
7+DSTDIR=$(EOSHOME)/bin
8+DSTDOC=$(EOSHOME)/doc
9+DSTTAR=$(EOSHOME)/tar
10+
11+INCFILES =
12+
13+LIBFILES = \
14+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
15+
16+LIBFILESDEBUG = \
17+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
18+
19+SRCC = \
20+ $(OBJECTNAME).c \
21+ init.c \
22+ argCheck.c \
23+ usage.c \
24+ util.c \
25+
26+SRCCXX = \
27+ $(OBJECTNAME).cc \
28+ init.cc \
29+ argCheck.cc \
30+ usage.cc \
31+ util.cc \
32+
33+MODULES = \
34+ $(OBJECTNAME).o \
35+ init.o \
36+ argCheck.o \
37+ usage.o \
38+ util.o \
39+
40+REALMODULES = \
41+ $(OSTYPE)/$(OBJECTNAME).o \
42+ $(OSTYPE)/init.o \
43+ $(OSTYPE)/argCheck.o \
44+ $(OSTYPE)/usage.o \
45+ $(OSTYPE)/util.o
46+
47+MODULESDEBUG = \
48+ $(OBJECTNAME).debugo \
49+ init.debugo \
50+ argCheck.debugo \
51+ usage.debugo \
52+ util.debugo \
53+
54+REALMODULESDEBUG = \
55+ $(OSTYPE)/$(OBJECTNAME).debugo \
56+ $(OSTYPE)/init.debugo \
57+ $(OSTYPE)/argCheck.debugo \
58+ $(OSTYPE)/usage.debugo \
59+ $(OSTYPE)/util.debugo
60+
61+
62+all: $(OSTYPE)/$(OBJECTNAME)
63+ if [ ! -L $(OSTYPE) ] ; then \
64+ moveHostdependent; \
65+ fi
66+
67+debug: $(OSTYPE)/$(OBJECTNAME).debug
68+
69+cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
70+
71+
72+$(OSTYPE)/$(OBJECTNAME)::
73+ @$(RM) -f $(OSTYPE)/Makefile ; \
74+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
75+ cd $(OSTYPE); \
76+ $(MAKE) $(OBJECTNAME) WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
77+
78+$(OSTYPE)/$(OBJECTNAME).debug::
79+ @$(RM) -f $(OSTYPE)/Makefile ; \
80+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
81+ cd $(OSTYPE); \
82+ $(MAKE) $(OBJECTNAME).debug WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
83+
84+$(OSTYPE)/$(OBJECTNAME).cudagdb::
85+ @$(RM) -f $(OSTYPE)/Makefile ; \
86+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
87+ cd $(OSTYPE); \
88+ $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
89+
90+cvsupdate::
91+ cvs -d $(EOS_CVSROOT) update -d
92+
93+cvscommit::
94+ cvs -d $(EOS_CVSROOT) commit
95+
96+edit:
97+ @if [ -r $(OBJECTNAME).c ]; \
98+ then \
99+ sccsEdit $(OBJECTNAME).c; \
100+ else \
101+ echo "Source files are already editable"; \
102+ fi
103+ @if [ -r wish/$(OBJECTNAME).wish ]; \
104+ then \
105+ cd wish; sccsEdit $(OBJECTNAME).wish; \
106+ else \
107+ echo "Source files (wish) are already editable."; \
108+ fi
109+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
110+ then \
111+ cd ruby; sccsEdit $(OBJECTNAME).rb; \
112+ else \
113+ echo "Source files (ruby) are already editable."; \
114+ fi
115+ @if [ -r perl/$(OBJECTNAME).pl ]; \
116+ then \
117+ cd perl; sccsEdit $(OBJECTNAME).pl ; \
118+ else \
119+ echo "Source files (perl) are already editable."; \
120+ fi
121+ @if [ -r ../Config/OptionControlFile ]; \
122+ then \
123+ cd ../Config; sccsEdit OptionControlFile; \
124+ else \
125+ echo "OptionControlFile are already editable."; \
126+ fi
127+
128+unedit:
129+ @if [ -w $(OBJECTNAME).c ]; \
130+ then \
131+ sccsUnedit $(OBJECTNAME).c; \
132+ else \
133+ echo "Source files are not editable"; \
134+ fi
135+ @if [ -w wish/$(OBJECTNAME).wish ]; \
136+ then \
137+ cd wish; sccsUnedit $(OBJECTNAME).wish; \
138+ else \
139+ echo "Source files (wish) are not editable."; \
140+ fi
141+ @if [ -w ruby/$(OBJECTNAME).rb]; \
142+ then \
143+ cd ruby; sccsUnedit $(OBJECTNAME).rb; \
144+ else \
145+ echo "Source files (ruby) are not editable."; \
146+ fi
147+ @if [ -w perl/$(OBJECTNAME).pl ]; \
148+ then \
149+ cd perl; sccsUnedit $(OBJECTNAME).pl ; \
150+ else \
151+ echo "Source files (ruby) are not editable."; \
152+ fi
153+ @if [ -w ../Config/OptionControlFile ]; \
154+ then \
155+ cd ../Config; sccsUnedit OptionControlFile; \
156+ else \
157+ echo "OptionControlFile are not editable."; \
158+ fi
159+
160+report:
161+ @if [ -r $(OBJECTNAME).c ]; \
162+ then \
163+ sccsReport $(OBJECTNAME).c; \
164+ else \
165+ echo "Source files are already editable"; \
166+ fi
167+ @if [ -r wish/$(OBJECTNAME).wish ]; \
168+ then \
169+ cd wish; sccsReport $(OBJECTNAME).wish; \
170+ else \
171+ echo "Source files (wish) are already editable."; \
172+ fi
173+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
174+ then \
175+ cd ruby; sccsReport $(OBJECTNAME).rb; \
176+ else \
177+ echo "Source files (ruby) are already editable."; \
178+ fi
179+ @if [ -r perl/$(OBJECTNAME).pl ] ; \
180+ then \
181+ cd perl; sccsReport $(OBJECTNAME).pl ; \
182+ else \
183+ echo "Source files (perl) are already editable."; \
184+ fi
185+ @if [ -r ../Config/OptionControlFile ]; \
186+ then \
187+ cd ../Config; sccsReport OptionControlFile; \
188+ else \
189+ echo "OptionControlFile are already editable."; \
190+ fi
191+
192+clean :
193+ rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
194+ $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
195+ $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
196+ $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
197+ $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
198+ *.bak *.$(OSTYPE) core
199+
200+install: install-bin install-doc install-wish install-ruby install-shell install-perl
201+ @if [ dummy$(KHOROS_KENGOBJ) != dummy ] ; \
202+ then \
203+ if [ -x $(KHOROS_KGENOBJ) ] ; \
204+ then \
205+ make install-khoros ; \
206+ fi; \
207+ fi
208+
209+install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
210+
211+$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME)
212+ @echo ---- Installing to bin
213+ @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
214+ @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
215+ then \
216+ mkdir $(DSTDIR)/$(OSTYPE); \
217+ fi
218+ @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
219+ then \
220+ echo "Compilation is complete"; \
221+ $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
222+ $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
223+ $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
224+ else \
225+ echo "Compilation is incomplete. $(OBJECTNAME)"; \
226+ fi
227+ @echo ---- end of bin
228+
229+install-wish:
230+ @if [ -d wish ]; \
231+ then \
232+ echo "---- Tcl/Tk file Install"; \
233+ if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
234+ then \
235+ mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
236+ fi ; \
237+ $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
238+ $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/* ;\
239+ touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
240+ $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
241+ echo "---- Tcl/Tk file Installed";\
242+ fi
243+
244+install-ruby:
245+ @if [ -d ruby ]; \
246+ then \
247+ echo "---- Ruby/Tk file Install"; \
248+ if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
249+ then \
250+ mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
251+ fi ; \
252+ $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
253+ $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
254+ echo "---- Ruby/Tk file Installed"; \
255+ fi
256+
257+install-perl:
258+ @if [ -d perl ]; \
259+ then \
260+ echo "---- Perl/Tk file Install"; \
261+ if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
262+ then \
263+ mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
264+ fi; \
265+ $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
266+ $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
267+ echo "---- Perl/Tk file Installed"; \
268+ fi
269+
270+install-shell:
271+ @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
272+ then \
273+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
274+ fi
275+ @if [ -d shell ]; \
276+ then \
277+ echo "---- Shell file Install"; \
278+ if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
279+ then \
280+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
281+ fi ; \
282+ $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
283+ $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
284+ echo "---- Shell file Installed"; \
285+ fi
286+
287+install-khoros:
288+ @echo Installing to khoros
289+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
290+ then \
291+ echo kgenobj;\
292+ $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form -lang ksh ; \
293+ fi
294+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
295+ then \
296+ $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
297+ fi
298+ @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
299+ then \
300+ $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
301+ if [ $? ] ; \
302+ then \
303+ echo "-- setting khoros ---" ; \
304+ if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
305+ then \
306+ $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
307+ $(RM) -f $(OBJECTNAME).pane ; \
308+ $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
309+ $(CD) ../../ ; \
310+ $(CHMOD) -R 555 $(OBJECTNAME); \
311+ else \
312+ echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
313+ fi ; \
314+ else \
315+ echo "Failed !!: Cannot chage mode in installing $(OBJECTNAME) to khoros system"; \
316+ fi ; \
317+ echo "-- end of khoros-installing"; \
318+ fi
319+
320+install-doc: html
321+ @if [ ! -d $(DSTDOC)/SmallTools ]; \
322+ then \
323+ mkdir $(DSTDOC)/SmallTools ;\
324+ fi
325+ @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
326+ then \
327+ $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
328+ fi
329+ @$(CP) $(OBJECTNAME).html $(DSTDOC)/SmallTools/$(OBJECTNAME).html
330+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
331+ @if [ -f ../doc/*.html ]; \
332+ then \
333+ $(CP) ../doc/*.html $(DSTDOC)/SmallTools/ ;\
334+ fi
335+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
336+ @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
337+ then \
338+ cd $(DSTDOC)/SmallTools; $(MAKE); \
339+ fi
340+
341+html: $(OBJECTNAME).html
342+
343+configFileRead:
344+ @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
345+
346+$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
347+ @echo creating html
348+ @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
349+ @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
350+ @$(RM) $(OBJECTNAME).html.tmp
351+
352+$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
353+ @ln -s -f ../sbin/MachineIndependent $@
354+
355+depend::
356+ @echo dependency checking now
357+ @if [ ! -L $(OSTYPE) ] ; then \
358+ moveHostdependent; \
359+ fi
360+ rm -f $(OSTYPE)/.Depend
361+ #echo C
362+ @if [ -f $(OBJECTNAME).c ] ; \
363+ then \
364+ echo "dependency: *.c"; \
365+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c ; \
366+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c >> $(OSTYPE)/.Depend ; \
367+ fi
368+ #echo CC
369+ @if [ -f $(OBJECTNAME).cc ] ; \
370+ then \
371+ echo "dependency: *.cc"; \
372+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
373+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
374+ fi
375+ @if [ -f $(OBJECTNAME).ccm ] ; \
376+ then \
377+ echo "dependency: *.ccm"; \
378+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
379+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
380+ fi
381+ @if [ -f $(OBJECTNAME).cu ] ; \
382+ then \
383+ echo "dependency: *.cu"; \
384+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
385+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
386+ fi
387+
388+update:../Config/OptionControlFile
389+ maketool $(CLASSNAME) $(OBJECTNAME) update
390+
391+changeName::
392+
393+Test:$(OSTYPE)/$(OBJECTNAME) TestDir
394+ @if [ -f test/Makefile ] ; \
395+ then \
396+ cd test; make ; \
397+ else \
398+ echo "No test Makefile"; \
399+ fi
400+
401+TestDir::
402+ @if [ ! -d test ] ; \
403+ then \
404+ echo "Creating test dir"; \
405+ mkdir test; \
406+ fi
407+ @if [ ! -f test/Makefile ] ; \
408+ then \
409+ echo "Creating Makefile"; \
410+ cd test; \
411+ protoTestMakefileCreate; \
412+ fi
413+ @if [ ! -d test/data ]; \
414+ then \
415+ mkdir $(EOSHOME)/data/$(OBJECTNAME); \
416+ cd test; \
417+ ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
418+ fi
419+
420+tar::
421+ cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
422+ ../bin/*/$(OBJECTNAME).* \
423+ ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
424+ ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
425+
426+-include $(OSTYPE)/.Depend
427+-include ../Config/Target.inc
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/src/X86MAC64
@@ -0,0 +1 @@
1+../../../../../hostdepend/X86MAC64/src/Tools/filter/mrcImage2FFT/src/X86MAC64
\ No newline at end of file
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/src/argCheck.c
@@ -0,0 +1,113 @@
1+#include <stdio.h>
2+#include <stdlib.h>
3+#include <string.h>
4+#include <math.h>
5+#include "../inc/config.h"
6+#include "genUtil.h"
7+#include "String.h"
8+#include "File.h"
9+#include "Memory.h"
10+
11+
12+void
13+argCheck(mrcImage2FFTInfo* info, int argc, char* argv[])
14+{
15+ long i;
16+ char s[1024];
17+ FILE* fpt;
18+
19+ if(NULL==(fpt=fopen(".EosLog", "a+"))) {
20+
21+ } else {
22+ for(i=0; i<argc; i++) {
23+ fprintf(fpt, "%s ", argv[i]);
24+ }
25+ fprintf(fpt, "\n");
26+ fclose(fpt);
27+ }
28+ for(i=1; i<argc; i++) {
29+ if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
30+ SSWITCH(argv[i]+OPTION_POS)
31+ SCASE("i") {
32+ if(i+1<argc) {
33+ info->In = stringGetNthWord(argv[i+1], 1, " ,");
34+ i++;
35+ info->flagIn++;
36+ } else {
37+ usage(argv[0]);
38+ exit(EXIT_FAILURE);
39+ }
40+ SBREAK;
41+ }
42+ SCASE("o") {
43+ if(i+1<argc) {
44+ info->Out = stringGetNthWord(argv[i+1], 1, " ,");
45+ i++;
46+ info->flagOut++;
47+ } else {
48+ usage(argv[0]);
49+ exit(EXIT_FAILURE);
50+ }
51+ SBREAK;
52+ }
53+ SCASE("C") {
54+ if(i+3<argc) {
55+ info->CentreX = stringGetNthRealData(argv[i+1], 1, " ,");
56+ i++;
57+ info->flagCentreX++;
58+ info->CentreY = stringGetNthRealData(argv[i+1], 1, " ,");
59+ i++;
60+ info->flagCentreY++;
61+ info->CentreZ = stringGetNthRealData(argv[i+1], 1, " ,");
62+ i++;
63+ info->flagCentreZ++;
64+ } else {
65+ usage(argv[0]);
66+ exit(EXIT_FAILURE);
67+ }
68+ SBREAK;
69+ }
70+ SCASE("c") {
71+ if(i+1<argc) {
72+ info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
73+ i++;
74+ info->flagconfigFile++;
75+ } else {
76+ usage(argv[0]);
77+ exit(EXIT_FAILURE);
78+ }
79+ SBREAK;
80+ }
81+ SCASE("m") {
82+ if(i+1<argc) {
83+ info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
84+ i++;
85+ info->flagmode++;
86+ } else {
87+ usage(argv[0]);
88+ exit(EXIT_FAILURE);
89+ }
90+ SBREAK;
91+ }
92+ SCASE("h") {
93+ usage(argv[0]);
94+ exit(EXIT_SUCCESS);
95+ break;
96+ }
97+ SCASE("html") {
98+ htmlBeforeUsage(argv[0]);
99+ usage(argv[0]);
100+ htmlAfterUsage(argv[0]);
101+ exit(EXIT_SUCCESS);
102+ break;
103+ }
104+ SDEFAULT {
105+ fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
106+ usage(argv[0]);
107+ exit(EXIT_FAILURE);
108+ break;
109+ }
110+ SSWITCHEND;
111+ }
112+ }
113+}
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/src/init.c
@@ -0,0 +1,103 @@
1+#include <stdio.h>
2+#include <stdlib.h>
3+#include <string.h>
4+#include <math.h>
5+#include "../inc/config.h"
6+#include "genUtil.h"
7+#include "String.h"
8+#include "File.h"
9+#include "Memory.h"
10+
11+
12+void
13+init0(mrcImage2FFTInfo* info)
14+{
15+ info->fptIn = NULL; info->flagIn = 0;
16+ info->fptOut = NULL; info->flagOut = 0;
17+ info->CentreX = -1; info->flagCentreX = 0;
18+ info->CentreY = -1; info->flagCentreY = 0;
19+ info->CentreZ = -1; info->flagCentreZ = 0;
20+ info->fptconfigFile = NULL; info->flagconfigFile = 0;
21+ info->mode = 0; info->flagmode = 0;
22+}
23+
24+void
25+init1(mrcImage2FFTInfo* info)
26+{
27+ char s[1024];
28+ int i;
29+ if(!info->flagIn) {
30+ stringGetFromFile(s, "In", stdin, stdout, 0);
31+ info->In = stringGetNthWord(s, 1, " ,\t");
32+ info->flagIn++;
33+ }
34+ if(info->flagIn) {
35+ info->fptIn = fileOpen(info->In, "r");
36+ }
37+
38+ if(!info->flagOut) {
39+ stringGetFromFile(s, "Out", stdin, stdout, 0);
40+ info->Out = stringGetNthWord(s, 1, " ,\t");
41+ info->flagOut++;
42+ }
43+ if(info->flagOut) {
44+ info->fptOut = fileOpen(info->Out, "w");
45+ }
46+
47+ if(info->flagCentreX) {
48+ }
49+
50+ if(info->flagCentreY) {
51+ }
52+
53+ if(info->flagCentreZ) {
54+ }
55+
56+ if(info->flagconfigFile) {
57+ info->fptconfigFile = fileOpen(info->configFile, "r");
58+ }
59+
60+ if(info->flagmode) {
61+ }
62+
63+}
64+#ifdef KHOROS
65+#include <stdio.h>
66+#include "bootstrap.h"
67+#include "dataserv.h"
68+#include "datamanip.h"
69+extern void func_usage_additions(void);
70+extern void func_free_args(kexit_status status, kaddr client_data);
71+extern void func_get_args(kform* pane);
72+
73+void
74+func_usage_additions(void)
75+{
76+}
77+void
78+func_free_args(kexit_status status, kaddr client_data)
79+{
80+}
81+void
82+func_get_args(kform* pane)
83+{
84+}
85+void
86+khorosInit(int argc, char* argv[])
87+{
88+ char* eospath;
89+ char panepath[1024];
90+ FILE* fpt;
91+
92+ eospath = getenv("EOS_HOME");
93+ sprintf(panepath, "%s/src/Tools/filter/mrcImage2FFT/src/mrcImage2FFT.pane", eospath);
94+ khoros_initialize(argc, argv, "EOS");
95+ fpt = fopen(panepath, "r"); if(NULL!=fpt) {
96+ fclose(fpt);
97+ kclui_initialize(panepath, KGEN_NONE, "EOS", "mrcImage2FFT",
98+ func_usage_additions,
99+ func_get_args,
100+ func_free_args);
101+ }
102+}
103+#endif /* KHOROS */
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/src/mrcImage2FFT.c
@@ -0,0 +1,75 @@
1+/*
2+# mrcImage2FFT : $Revision$
3+# $Date$
4+# Created by $Author$
5+# Usage : mrcImage2FFT
6+# Attention
7+# $Loccker$
8+# $State$
9+#
10+*/
11+#include <stdio.h>
12+#include <stdlib.h>
13+#include <string.h>
14+#include <math.h>
15+#define GLOBAL_DECLARATION
16+#include "../inc/config.h"
17+
18+#define DEBUG
19+#include "genUtil.h"
20+#include "mrcImage.h"
21+#include "lmrcImageToFFT.h"
22+
23+/*
24+Example:
25+typedef struct lmrcImage2FFTInfo {
26+ float a;
27+ int b;
28+} lmrcImage2FFTInfo;
29+
30+typedef enum lmrcImage2FFTMode {
31+ a=0,
32+ b=1
33+} lmrcImage2FFTMode;
34+*/
35+
36+int
37+main(int argc, char* argv[])
38+{
39+ mrcImage in;
40+ mrcImage out;
41+ mrcImage2FFTInfo info;
42+ mrcImageParaTypeRealCoord centre;
43+
44+ init0(&info);
45+ argCheck(&info, argc, argv);
46+ init1(&info);
47+
48+ DEBUGPRINT("Program Start\n");
49+
50+ mrcFileRead(&in, info.In, "in main", 0);
51+
52+
53+ if(info.flagCentreX) {
54+ centre.x = info.CentreX;
55+ centre.y = info.CentreY;
56+ centre.z = info.CentreZ;
57+ } else {
58+ centre.x = in.HeaderN.x/2;
59+ centre.y = in.HeaderN.y/2;
60+ centre.z = in.HeaderN.z/2;
61+ }
62+
63+ DEBUGPRINT("lmrcImageToFFT\n");
64+ lmrcImageToFFT(&out, &in, centre, info.mode);
65+
66+ mrcFileWrite(&out, info.Out, "in main", 0);
67+
68+ exit(EXIT_SUCCESS);
69+}
70+
71+void
72+additionalUsage()
73+{
74+ fprintf(stderr, "----- Additional Usage -----\n");
75+}
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/src/mrcImage2FFT.html
@@ -0,0 +1,21 @@
1+<HTML>
2+<HEAD>
3+<TITLE>mrcImage2FFT</TITLE>
4+</HEAD>
5+<BODY>
6+<H1>mrcImage2FFT</H1>
7+<H2>Usage</H2>
8+<PRE>
9+Usage: mrcImage2FFT
10+Options:
11+ [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input:mrcImage(Image)
12+ [-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output:mrcImage(FT)
13+ [-C[entre] CentreX (-1 ).as(Real )
14+ CentreY (-1 ).as(Real )
15+ CentreZ (-1 ).as(Real ) ] :Optional :Centre
16+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
17+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
18+----- Additional Usage -----
19+</PRE>
20+</BODY>
21+</HTML>
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/src/mrcImage2FFT.pane
@@ -0,0 +1,17 @@
1+-F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
2+ -M 1 1 52x1+0+0 +1+0 ' ' subform
3+ -P 1 0 52x1+0+1 +0+0 ' ' mrcImage2FFT
4+ -D 1 0 9x1+0+0 'Options' _gui_options
5+ -H 1 6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
6+ -E
7+ -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/mrcImage2FFT
8+ -H 1 5x1+41+0 'Help' 'help page' $EOS/src/Tools/filter/mrcImage2FFT/doc/mrcImage2FFT.doc help
9+ -Q 1 0 5.25x1+47+0 'Close'
10+ -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'Input:mrcImage(Image)' i
11+ -O 1 0 1 1 0 1 -1x1+1+3.000000 ' ' 'Out' 'Output:mrcImage(FT)' o
12+ -I 1 0 0 1 0 1 -1x1+1+4 ' ' '-1' 'CentreX' Centre
13+ -I 1 0 1 0 0 1 -1x1+1+6.000000 ' ' 'configFile' 'ConfigurationFile' c
14+ -i 1 0 1 0 0 -1x1+1+7.500000 0 0 0 0 0 'mode' 'Mode' m
15+ -E
16+ -E
17+-E
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/src/usage.c
@@ -0,0 +1,37 @@
1+#include <stdio.h>
2+#include <stdlib.h>
3+#include "../inc/config.h"
4+
5+void
6+usage(char* thisProgram)
7+{
8+ fprintf(stderr, "Usage: %s\n", thisProgram);
9+ fprintf(stderr, "Options:\n");
10+ fprintf(stderr, " [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input:mrcImage(Image)\n");
11+ fprintf(stderr, " [-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output:mrcImage(FT)\n");
12+ fprintf(stderr, " [-C[entre] CentreX (-1 ).as(Real ) \n CentreY (-1 ).as(Real ) \n CentreZ (-1 ).as(Real ) ] :Optional :Centre\n");
13+ fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
14+ fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode\n");
15+ additionalUsage();
16+}
17+
18+void
19+htmlBeforeUsage(char* thisProgram)
20+{
21+ fprintf(stderr, "<HTML>\n");
22+ fprintf(stderr, "<HEAD>\n");
23+ fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
24+ fprintf(stderr, "</HEAD>\n");
25+ fprintf(stderr, "<BODY>\n");
26+ fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
27+ fprintf(stderr, "<H2>Usage</H2>\n");
28+ fprintf(stderr, "<PRE>\n");
29+}
30+
31+void
32+htmlAfterUsage(char* thisProgram)
33+{
34+ fprintf(stderr, "</PRE>\n");
35+ fprintf(stderr, "</BODY>\n");
36+ fprintf(stderr, "</HTML>\n");
37+}
--- /dev/null
+++ b/src/Tools/filter/mrcImage2FFT/src/util.c
@@ -0,0 +1,4 @@
1+#include <stdio.h>
2+#include <stdlib.h>
3+#include "../inc/config.h"
4+
--- a/src/Tools/mrcImage/mrcFFTCentralSectionCompare/src/test/Out.txt
+++ /dev/null
@@ -1 +0,0 @@
1-0.159154
Show on old repository browser