Software Map

EGO is a program to perform molecular dynamics simulations on parallel as well as on sequential computers. Supported parallel machines include the Hitachi SR8000, CRAY-T3E, IBM-SP2, Fujitsu VPP700, Parsytec-CC under PARIX, and inhomogeneous clusters of UNIX workstations under PVM or MPI. EGO also runs sequentially on any decent UNIX workstation, even Windows95/NT PC's (with a GNU-C compiler) can be used.

Hogwash is a layer 2 packet scrubber based on the snort signature engine. Hogwash sits in line, and drops packets based on signature matches. The rule set will be familiar to anyone that has used snort before. Hogwash supports passive host identification and adaptive rule sets for added accuracy.

cvsroot is a script to help keep track of multiple
sites when using CVS, and in particular the
CVSROOT and CVS_RSH environment variables for
those sites. It creates a $HOME/.cvsroot file,
with shortcut names representing the different
CVS sites. The new environment variables
appropriate to the site selected will then be
set, and a new shell will be spawned to keep the
variables. In this way, you do not have to keep
setting the environment yourself, and can rely on
the script to keep track of things for you.

G-Kermit is a Unix program for transferring files with the Kermit protocol. It only supports bare-bones file transfer, to be used on the remote end of the connection.

ProteomeCommons.org IO Framework is a proper Java
framework for handling spectra and peak lists. The
framework can read and write to a number of
different spectra and peak list formats, and it
provides a simple, intuitive Java object model for
working with spectra or peak lists. All classes
support two methods of handling peak list and
spectrum data: in-memory or stream. The goal of
this framework is to support all the popular MS
and MSMS data formats, and to eliminate any time
or effort involved in figuring out how to read and
write peak list or spectrum files.

PHP Mobile Mail is aimed at mobile professionals
who want to use their favorite MUAs (noteably pine
or mutt) on their laptop, either in UNIX or Windows
(under GNU Gygwin). This lets you work offline. It
includes a mail_spooler program, which accepts the
output of you MUA and spools (on, or offline).
When connected, another process parses through
the spool and sends your messages. It is also
designed to "fake" using your REAL email address
with free services like gmx.net, or mail.yahoo.com,
when using their POP and SMTP servers, assuming
you have a domain and account that you can
control to this degree.

Yanf is a configurable news fetcher that fetches news from many news sites and outputs what it fetches in a configurable format. It supports Slashdot, Freshmeat, 32bitsonline, Segfault, Packetstorm, LinuxTelephony, LinuxToday, LinuxApps, BeBits, Geeknews, Linux2000, and Securityfocus. It also supports backends in the RSS/RDF format and the daily static cartoon from Userfriendly.

eCRM is not an ordinary mailing list manager or an
ordinary mailto CGI; it is a small Web-based
customer relationship management system. It
contains many usefull functions for business
needs. With eCRM you can manage your customers
online and transfer them in to your normal
applications. Key features include address
management, ability to group customer records,
statistics about your customers, automatic form
creation that can be implemented on several Web
sites (mailto that stores the contact in the
database), and more.

METAXPON ("Metachron" in Greek letters) is a small and fast audio DSP library for time-scale manipulation of 16-bit integer or 32-bit floating point stereo audio data streams. It employs a rigid phase-locked vocoder with dedicated transient detection and processing, and can work in real-time or non-real-time. Four editions are included - a portable edition and three x86 editions. The portable edition can be built with any ANSI C compiler and is OS- and architecture-independent. The three x86 editions are written in assembly using the FPU, 3DNow!, and SSE instruction sets, respectively, with automatic selection between them depending on the CPU capabilities. They can be compiled with MASM, JWASM, or NASM, producing libraries of object files in 8 formats.

pam_cucipop is a patch that enables cucipop to use the PAM authentication mechanism. This is not part of the official cucipop release. It also includes a patch to fix an out by one segmentation fault problem.

The goal of the Nagios Enterprise Performance
Monitoring Plugin project is to come up with
enterprise performance monitoring plugins for
commercial enterprise applications, databases, and
application frameworks.

Uptime Client is a little program that keeps track of
your uptime and sends it to a server where you
can compare it to many other hosts and browse
through various statistical information.

Uni-XML is a project to replace standard Unix
configuration files with XML. It also includes
providing XML Schema files for the XML files, and
XSLT stylesheets to convert the XML files to the
configuration files.

The File Upload Webmin Module allows file uploads
via Webmin. It is especially useful for users who
cannot or do not want to use the Java file manager.